Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Gm13146-201ENSMUST00000118508 780 ntBASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Ddb1Q3U1J4 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 AC135637.1-201ENSMUST00000227750 365 ntBASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ddb1Q3U1J4 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ddb1Q3U1J4 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
Ddb1Q3U1J4 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 AC158538.1-201ENSMUST00000225870 294 ntBASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Gm10812-201ENSMUST00000099864 546 ntBASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ddb1Q3U1J4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Ddb1Q3U1J4 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ddb1Q3U1J4 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Ddb1Q3U1J4 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ddb1Q3U1J4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
Ddb1Q3U1J4 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
Ddb1Q3U1J4 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC25.47■■□□□ 1.67
Ddb1Q3U1J4 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ddb1Q3U1J4 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Ddb1Q3U1J4 Gm37856-201ENSMUST00000191634 999 ntBASIC25.46■■□□□ 1.67
Ddb1Q3U1J4 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Ddb1Q3U1J4 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ddb1Q3U1J4 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ddb1Q3U1J4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
Ddb1Q3U1J4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Ddb1Q3U1J4 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Gm6420-201ENSMUST00000193885 723 ntBASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 CT010467.1-202ENSMUST00000205406 714 ntBASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Ddb1Q3U1J4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ddb1Q3U1J4 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ddb1Q3U1J4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC25.44■■□□□ 1.66
Ddb1Q3U1J4 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ddb1Q3U1J4 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ddb1Q3U1J4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 CT030146.1-201ENSMUST00000220919 217 ntBASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
Ddb1Q3U1J4 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ddb1Q3U1J4 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ddb1Q3U1J4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC25.42■■□□□ 1.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms