Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col28a1Q2UY11 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col28a1Q2UY11 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col28a1Q2UY11 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col28a1Q2UY11 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col28a1Q2UY11 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col28a1Q2UY11 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col28a1Q2UY11 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Gm7417-201ENSMUST00000192950 473 ntBASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col28a1Q2UY11 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col28a1Q2UY11 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col28a1Q2UY11 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col28a1Q2UY11 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col28a1Q2UY11 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Col28a1Q2UY11 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms