Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shox2P70390 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shox2P70390 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shox2P70390 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shox2P70390 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shox2P70390 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.69■□□□□ 0.74
Shox2P70390 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.69■□□□□ 0.74
Shox2P70390 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.68■□□□□ 0.74
Shox2P70390 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Shox2P70390 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 BC021767-201ENSMUST00000126387 1716 ntBASIC19.68■□□□□ 0.74
Shox2P70390 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.68■□□□□ 0.74
Shox2P70390 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shox2P70390 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Shox2P70390 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
Shox2P70390 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Shox2P70390 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Shox2P70390 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shox2P70390 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Shox2P70390 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Shox2P70390 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Shox2P70390 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Shox2P70390 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shox2P70390 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.65■□□□□ 0.74
Shox2P70390 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.65■□□□□ 0.74
Shox2P70390 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC19.65■□□□□ 0.74
Shox2P70390 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shox2P70390 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shox2P70390 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
Shox2P70390 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shox2P70390 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shox2P70390 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Shox2P70390 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shox2P70390 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shox2P70390 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shox2P70390 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Shox2P70390 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.63■□□□□ 0.73
Shox2P70390 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shox2P70390 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shox2P70390 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shox2P70390 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.62■□□□□ 0.73
Shox2P70390 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC19.62■□□□□ 0.73
Shox2P70390 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shox2P70390 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
Shox2P70390 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shox2P70390 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Shox2P70390 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.6■□□□□ 0.73
Shox2P70390 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Shox2P70390 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shox2P70390 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms