Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Msh6P54276 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Msh6P54276 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Msh6P54276 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Msh6P54276 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC25.46■■□□□ 1.67
Msh6P54276 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Msh6P54276 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Msh6P54276 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC25.46■■□□□ 1.67
Msh6P54276 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Msh6P54276 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
Msh6P54276 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
Msh6P54276 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC25.46■■□□□ 1.67
Msh6P54276 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC25.46■■□□□ 1.67
Msh6P54276 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
Msh6P54276 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Msh6P54276 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC25.45■■□□□ 1.67
Msh6P54276 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
Msh6P54276 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Msh6P54276 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.66
Msh6P54276 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Msh6P54276 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC25.44■■□□□ 1.66
Msh6P54276 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC25.44■■□□□ 1.66
Msh6P54276 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Msh6P54276 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Msh6P54276 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
Msh6P54276 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC25.44■■□□□ 1.66
Msh6P54276 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC25.44■■□□□ 1.66
Msh6P54276 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC25.44■■□□□ 1.66
Msh6P54276 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
Msh6P54276 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Msh6P54276 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
Msh6P54276 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
Msh6P54276 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC25.43■■□□□ 1.66
Msh6P54276 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Msh6P54276 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Snhg20-203ENSMUST00000182811 2153 ntBASIC25.42■■□□□ 1.66
Msh6P54276 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC25.42■■□□□ 1.66
Msh6P54276 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC25.42■■□□□ 1.66
Msh6P54276 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
Msh6P54276 Gm10602-201ENSMUST00000098239 609 ntBASIC25.42■■□□□ 1.66
Msh6P54276 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC25.41■■□□□ 1.66
Msh6P54276 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC25.41■■□□□ 1.66
Msh6P54276 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Msh6P54276 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Msh6P54276 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Msh6P54276 Gm14281-201ENSMUST00000121700 1294 ntBASIC25.4■■□□□ 1.66
Msh6P54276 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC25.4■■□□□ 1.66
Msh6P54276 AC137127.1-201ENSMUST00000213466 1078 ntBASIC25.4■■□□□ 1.66
Msh6P54276 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Msh6P54276 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Msh6P54276 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Msh6P54276 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Msh6P54276 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC25.39■■□□□ 1.65
Msh6P54276 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC25.39■■□□□ 1.65
Msh6P54276 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.65
Msh6P54276 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Msh6P54276 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Msh6P54276 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Msh6P54276 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Msh6P54276 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Msh6P54276 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Msh6P54276 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Msh6P54276 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC25.36■■□□□ 1.65
Msh6P54276 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Msh6P54276 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
Msh6P54276 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Msh6P54276 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Msh6P54276 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC25.34■■□□□ 1.65
Msh6P54276 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Msh6P54276 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC25.34■■□□□ 1.65
Msh6P54276 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Msh6P54276 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
Msh6P54276 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms