Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx2P43241 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx2P43241 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx2P43241 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx2P43241 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.95■□□□□ 0.62
Cdx2P43241 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.95■□□□□ 0.62
Cdx2P43241 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx2P43241 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx2P43241 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx2P43241 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdx2P43241 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx2P43241 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.94■□□□□ 0.62
Cdx2P43241 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx2P43241 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx2P43241 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Cdx2P43241 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx2P43241 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx2P43241 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx2P43241 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Cdx2P43241 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx2P43241 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Gm12441-201ENSMUST00000121806 588 ntBASIC18.92■□□□□ 0.62
Cdx2P43241 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Mir5133-201ENSMUST00000174955 77 ntBASIC18.92■□□□□ 0.62
Cdx2P43241 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.92■□□□□ 0.62
Cdx2P43241 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.92■□□□□ 0.62
Cdx2P43241 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Cdx2P43241 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx2P43241 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cdx2P43241 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.91■□□□□ 0.62
Cdx2P43241 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cdx2P43241 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.91■□□□□ 0.62
Cdx2P43241 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cdx2P43241 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Cdx2P43241 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.91■□□□□ 0.62
Cdx2P43241 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.9■□□□□ 0.62
Cdx2P43241 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.9■□□□□ 0.62
Cdx2P43241 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx2P43241 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cdx2P43241 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx2P43241 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.89■□□□□ 0.61
Cdx2P43241 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.89■□□□□ 0.61
Cdx2P43241 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
Cdx2P43241 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Cdx2P43241 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.88■□□□□ 0.61
Cdx2P43241 Nespas-201ENSMUST00000143738 1083 ntBASIC18.88■□□□□ 0.61
Cdx2P43241 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Cdx2P43241 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.88■□□□□ 0.61
Cdx2P43241 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx2P43241 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.87■□□□□ 0.61
Cdx2P43241 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Gm10653-202ENSMUST00000139570 835 ntBASIC18.87■□□□□ 0.61
Cdx2P43241 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.87■□□□□ 0.61
Cdx2P43241 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Cdx2P43241 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Cdx2P43241 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Cdx2P43241 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdx2P43241 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.86■□□□□ 0.61
Cdx2P43241 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx2P43241 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx2P43241 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx2P43241 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx2P43241 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx2P43241 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Cdx2P43241 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx2P43241 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Cdx2P43241 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx2P43241 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms