Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
P20040 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
P20040 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
P20040 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
P20040 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
P20040 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
P20040 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
P20040 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
P20040 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.51■□□□□ 0.39
P20040 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
P20040 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
P20040 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
P20040 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
P20040 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
P20040 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
P20040 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.5■□□□□ 0.39
P20040 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
P20040 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
P20040 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
P20040 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
P20040 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
P20040 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.49■□□□□ 0.39
P20040 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.49■□□□□ 0.39
P20040 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
P20040 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
P20040 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
P20040 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
P20040 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.48■□□□□ 0.39
P20040 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.48■□□□□ 0.39
P20040 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.48■□□□□ 0.39
P20040 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
P20040 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC17.47■□□□□ 0.39
P20040 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.47■□□□□ 0.39
P20040 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
P20040 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.47■□□□□ 0.39
P20040 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
P20040 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Gm12922-201ENSMUST00000120626 809 ntBASIC17.46■□□□□ 0.39
P20040 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.46■□□□□ 0.39
P20040 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.46■□□□□ 0.39
P20040 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
P20040 Gm9847-201ENSMUST00000052528 599 ntBASIC17.46■□□□□ 0.39
P20040 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
P20040 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
P20040 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
P20040 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
P20040 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.45■□□□□ 0.38
P20040 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
P20040 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
P20040 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms