Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdx1P18111 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdx1P18111 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC15.84■□□□□ 0.13
Cdx1P18111 AC164433.2-201ENSMUST00000226346 1701 ntBASIC15.84■□□□□ 0.13
Cdx1P18111 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Cdx1P18111 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC15.84■□□□□ 0.13
Cdx1P18111 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdx1P18111 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdx1P18111 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdx1P18111 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdx1P18111 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdx1P18111 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
Cdx1P18111 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cdx1P18111 Gm5131-201ENSMUST00000212776 1238 ntBASIC15.83■□□□□ 0.12
Cdx1P18111 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC15.83■□□□□ 0.12
Cdx1P18111 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC15.83■□□□□ 0.12
Cdx1P18111 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Cdx1P18111 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdx1P18111 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
Cdx1P18111 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdx1P18111 Gm5784-201ENSMUST00000179344 2478 ntBASIC15.82■□□□□ 0.12
Cdx1P18111 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC15.81■□□□□ 0.12
Cdx1P18111 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdx1P18111 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdx1P18111 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.8■□□□□ 0.12
Cdx1P18111 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdx1P18111 Fam105a-203ENSMUST00000226170 3043 ntBASIC15.8■□□□□ 0.12
Cdx1P18111 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC15.8■□□□□ 0.12
Cdx1P18111 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cdx1P18111 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC15.8■□□□□ 0.12
Cdx1P18111 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC15.8■□□□□ 0.12
Cdx1P18111 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdx1P18111 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Cdx1P18111 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdx1P18111 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Cdx1P18111 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC15.79■□□□□ 0.12
Cdx1P18111 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Cdx1P18111 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC15.79■□□□□ 0.12
Cdx1P18111 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC15.79■□□□□ 0.12
Cdx1P18111 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC15.79■□□□□ 0.12
Cdx1P18111 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdx1P18111 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Cdx1P18111 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC15.78■□□□□ 0.12
Cdx1P18111 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdx1P18111 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx1P18111 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx1P18111 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms