Protein–RNA interactions for Protein: O88384

Vti1b, Vesicle transport through interaction with t-SNAREs homolog 1B, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1bO88384 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vti1bO88384 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vti1bO88384 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vti1bO88384 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.82■□□□□ 0.6
Vti1bO88384 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Vti1bO88384 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.81■□□□□ 0.6
Vti1bO88384 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.81■□□□□ 0.6
Vti1bO88384 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.81■□□□□ 0.6
Vti1bO88384 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.81■□□□□ 0.6
Vti1bO88384 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vti1bO88384 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.81■□□□□ 0.6
Vti1bO88384 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Vti1bO88384 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.8■□□□□ 0.6
Vti1bO88384 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1bO88384 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.79■□□□□ 0.6
Vti1bO88384 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vti1bO88384 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1bO88384 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.78■□□□□ 0.6
Vti1bO88384 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.78■□□□□ 0.6
Vti1bO88384 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.78■□□□□ 0.6
Vti1bO88384 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Vti1bO88384 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Vti1bO88384 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1bO88384 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.77■□□□□ 0.6
Vti1bO88384 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Vti1bO88384 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.77■□□□□ 0.6
Vti1bO88384 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Vti1bO88384 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1bO88384 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Vti1bO88384 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1bO88384 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Vti1bO88384 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Gm22238-201ENSMUST00000175222 88 ntBASIC18.75■□□□□ 0.59
Vti1bO88384 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Vti1bO88384 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1bO88384 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Vti1bO88384 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.74■□□□□ 0.59
Vti1bO88384 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.74■□□□□ 0.59
Vti1bO88384 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.74■□□□□ 0.59
Vti1bO88384 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.74■□□□□ 0.59
Vti1bO88384 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.74■□□□□ 0.59
Vti1bO88384 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1bO88384 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms