Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Traf1P39428 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Traf1P39428 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
Traf1P39428 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 4930517J16Rik-201ENSMUST00000193095 1568 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 B430203G13Rik-201ENSMUST00000169657 1375 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Abcc4-201ENSMUST00000036554 5715 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Ms4a6b-201ENSMUST00000025580 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Rasgrp4-212ENSMUST00000204194 2993 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Acnat1-201ENSMUST00000095086 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gm21039-201ENSMUST00000223359 2012 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Snora68-201ENSMUST00000104375 131 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Gm26368-201ENSMUST00000157826 118 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gm22662-201ENSMUST00000175290 256 ntBASIC12.17□□□□□ -0.46
Traf1P39428 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm4430-202ENSMUST00000193902 1041 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 AC241616.1-201ENSMUST00000213741 166 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm8796-201ENSMUST00000219122 936 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Mrps18b-201ENSMUST00000025305 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 1110034G24Rik-201ENSMUST00000061891 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gm6564-201ENSMUST00000075377 619 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Mrgpra1-201ENSMUST00000098438 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm45663-201ENSMUST00000210429 1632 ntBASIC12.17□□□□□ -0.46
Traf1P39428 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC12.17□□□□□ -0.46
Traf1P39428 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
Traf1P39428 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Traf1P39428 Gm7052-201ENSMUST00000167568 1512 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Mettl14-204ENSMUST00000174323 4202 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gm26637-201ENSMUST00000180880 2289 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gm43052-201ENSMUST00000201451 1628 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Atcayos-203ENSMUST00000150782 3057 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 AC124561.1-202ENSMUST00000228652 1929 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Traf1P39428 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm15264-201ENSMUST00000118050 502 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Lypla1-203ENSMUST00000119612 529 ntTSL 3 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm14231-201ENSMUST00000120090 592 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm24140-201ENSMUST00000122773 326 ntBASIC12.16□□□□□ -0.46
Traf1P39428 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Glmp-207ENSMUST00000176425 960 ntTSL 5 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm24954-201ENSMUST00000178831 110 ntBASIC12.16□□□□□ -0.46
Traf1P39428 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm28916-201ENSMUST00000186988 699 ntBASIC12.16□□□□□ -0.46
Traf1P39428 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Traf1P39428 Gm5543-201ENSMUST00000193329 1091 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Gm37944-201ENSMUST00000194233 414 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Gm37688-201ENSMUST00000195195 465 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Gm42780-201ENSMUST00000197083 734 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Gm6794-201ENSMUST00000203829 457 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Gm45308-201ENSMUST00000210610 415 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Btg4-203ENSMUST00000213680 1282 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gm18596-201ENSMUST00000218133 843 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms