Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC9.39□□□□□ -0.91
P20040 4930471C04Rik-201ENSMUST00000166038 865 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC9.39□□□□□ -0.91
P20040 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC9.39□□□□□ -0.91
P20040 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
P20040 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC9.39□□□□□ -0.91
P20040 Gm9116-201ENSMUST00000192400 1018 ntBASIC9.39□□□□□ -0.91
P20040 Nme6-206ENSMUST00000197627 905 ntTSL 3 BASIC9.39□□□□□ -0.91
P20040 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Gm43671-201ENSMUST00000200422 433 ntBASIC9.39□□□□□ -0.91
P20040 Gm3028-201ENSMUST00000213805 1119 ntBASIC9.39□□□□□ -0.91
P20040 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC9.39□□□□□ -0.91
P20040 AC134248.1-201ENSMUST00000216113 1176 ntBASIC9.39□□□□□ -0.91
P20040 AC129975.1-201ENSMUST00000224816 592 ntBASIC9.39□□□□□ -0.91
P20040 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Gm9873-201ENSMUST00000063891 1097 ntBASIC9.39□□□□□ -0.91
P20040 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Pdzd7-202ENSMUST00000145391 4088 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
P20040 Ctcfl-201ENSMUST00000094287 3217 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
P20040 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Ptpn21-201ENSMUST00000085116 5696 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Ggct-202ENSMUST00000131475 3960 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Plec-215ENSMUST00000169108 14853 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Exoc4-202ENSMUST00000090381 2598 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 2700049A03Rik-203ENSMUST00000149564 5763 ntAPPRIS P4 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
P20040 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Ppm1f-201ENSMUST00000027373 4922 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
P20040 Cacna1c-210ENSMUST00000187474 6911 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC9.39□□□□□ -0.91
P20040 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC9.39□□□□□ -0.91
P20040 Ank1-205ENSMUST00000117296 6794 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
P20040 Eif2ak4-201ENSMUST00000005233 5212 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Clic5-201ENSMUST00000024755 5870 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
P20040 Mical1-201ENSMUST00000019967 3563 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Zfp111-202ENSMUST00000073833 3079 ntAPPRIS P3 TSL 5 BASIC9.38□□□□□ -0.91
P20040 Umodl1-203ENSMUST00000114555 5041 ntAPPRIS P2 TSL 5 BASIC9.38□□□□□ -0.91
P20040 Pex2-203ENSMUST00000164828 2051 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
P20040 Padi1-201ENSMUST00000026378 3754 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gm45124-201ENSMUST00000206723 2755 ntBASIC9.38□□□□□ -0.91
P20040 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Atxn7l3-203ENSMUST00000107134 3712 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
P20040 Cfap61-204ENSMUST00000126415 2256 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Taf3-204ENSMUST00000114909 4897 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC9.38□□□□□ -0.91
P20040 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC9.38□□□□□ -0.91
P20040 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gm12986-201ENSMUST00000119037 967 ntBASIC9.38□□□□□ -0.91
P20040 Gm9673-201ENSMUST00000119287 781 ntBASIC9.38□□□□□ -0.91
P20040 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC9.38□□□□□ -0.91
P20040 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Snord55-201ENSMUST00000174939 79 ntBASIC9.38□□□□□ -0.91
P20040 Gm9135-201ENSMUST00000182963 990 ntBASIC9.38□□□□□ -0.91
P20040 Gm9369-201ENSMUST00000196009 733 ntBASIC9.38□□□□□ -0.91
P20040 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC9.38□□□□□ -0.91
P20040 Gm42655-201ENSMUST00000202782 1134 ntBASIC9.38□□□□□ -0.91
P20040 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gm3793-201ENSMUST00000204973 672 ntBASIC9.38□□□□□ -0.91
P20040 Gm19091-201ENSMUST00000208120 978 ntBASIC9.38□□□□□ -0.91
P20040 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC9.38□□□□□ -0.91
P20040 Gm3619-201ENSMUST00000219947 775 ntBASIC9.38□□□□□ -0.91
P20040 Id2-203ENSMUST00000222667 958 ntBASIC9.38□□□□□ -0.91
P20040 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
P20040 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
P20040 Casq2-205ENSMUST00000165540 2434 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Dspp-201ENSMUST00000112771 4431 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Fbxo38-201ENSMUST00000048688 4388 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Mllt10-201ENSMUST00000028076 4917 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 CT025645.2-201ENSMUST00000223278 3827 ntBASIC9.38□□□□□ -0.91
P20040 Gm40557-201ENSMUST00000220782 2736 ntTSL 5 BASIC9.38□□□□□ -0.91
P20040 Dysf-215ENSMUST00000204591 6641 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
P20040 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
P20040 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
P20040 Tmco3-201ENSMUST00000045229 4335 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 61.3 ms