Protein–RNA interactions for Protein: Q8VEE1

Lmcd1, LIM and cysteine-rich domains protein 1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmcd1Q8VEE1 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.43■■□□□ 1.02
Lmcd1Q8VEE1 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Lmcd1Q8VEE1 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Lmcd1Q8VEE1 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Lmcd1Q8VEE1 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lmcd1Q8VEE1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Gm43859-201ENSMUST00000200075 1412 ntBASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Lmcd1Q8VEE1 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Gm29241-201ENSMUST00000189260 1096 ntBASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lmcd1Q8VEE1 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Lmcd1Q8VEE1 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.39■■□□□ 1.01
Lmcd1Q8VEE1 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lmcd1Q8VEE1 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.37■■□□□ 1.01
Lmcd1Q8VEE1 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Gm13836-201ENSMUST00000121159 501 ntBASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Gm37856-201ENSMUST00000191634 999 ntBASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lmcd1Q8VEE1 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Lmcd1Q8VEE1 Gm13181-201ENSMUST00000120117 1069 ntBASIC21.35■■□□□ 1.01
Lmcd1Q8VEE1 Gm6365-201ENSMUST00000054711 744 ntBASIC21.35■■□□□ 1.01
Lmcd1Q8VEE1 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lmcd1Q8VEE1 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lmcd1Q8VEE1 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.33■■□□□ 1.01
Lmcd1Q8VEE1 AC130671.1-201ENSMUST00000227384 1237 ntBASIC21.33■■□□□ 1.01
Lmcd1Q8VEE1 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lmcd1Q8VEE1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.33■■□□□ 1
Lmcd1Q8VEE1 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lmcd1Q8VEE1 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lmcd1Q8VEE1 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lmcd1Q8VEE1 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lmcd1Q8VEE1 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lmcd1Q8VEE1 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC21.31■■□□□ 1
Lmcd1Q8VEE1 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lmcd1Q8VEE1 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms