Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Gm43566-201ENSMUST00000196851 808 ntBASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28aQ8CEI3 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28aQ8CEI3 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc28aQ8CEI3 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Gm13238-201ENSMUST00000117655 780 ntBASIC20.96■□□□□ 0.95
Ccdc28aQ8CEI3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Gm7143-201ENSMUST00000222811 859 ntBASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc28aQ8CEI3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28aQ8CEI3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28aQ8CEI3 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28aQ8CEI3 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Gm5921-201ENSMUST00000075898 882 ntBASIC20.91■□□□□ 0.94
Ccdc28aQ8CEI3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28aQ8CEI3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28aQ8CEI3 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28aQ8CEI3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28aQ8CEI3 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28aQ8CEI3 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms