Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.19■□□□□ 0.82
Six4Q61321 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.19■□□□□ 0.82
Six4Q61321 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.19■□□□□ 0.82
Six4Q61321 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Six4Q61321 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Six4Q61321 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Six4Q61321 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Six4Q61321 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Six4Q61321 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Six4Q61321 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.18■□□□□ 0.82
Six4Q61321 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Six4Q61321 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six4Q61321 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six4Q61321 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Six4Q61321 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Six4Q61321 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six4Q61321 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six4Q61321 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six4Q61321 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.16■□□□□ 0.82
Six4Q61321 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.16■□□□□ 0.82
Six4Q61321 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six4Q61321 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Six4Q61321 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Six4Q61321 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.15■□□□□ 0.82
Six4Q61321 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Six4Q61321 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Six4Q61321 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.14■□□□□ 0.82
Six4Q61321 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Six4Q61321 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
Six4Q61321 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Six4Q61321 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Six4Q61321 Gm12251-201ENSMUST00000117893 792 ntBASIC20.14■□□□□ 0.81
Six4Q61321 Gm12821-201ENSMUST00000120022 600 ntBASIC20.14■□□□□ 0.81
Six4Q61321 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six4Q61321 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.14■□□□□ 0.81
Six4Q61321 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six4Q61321 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Six4Q61321 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six4Q61321 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six4Q61321 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Six4Q61321 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Six4Q61321 Gm45417-201ENSMUST00000209533 758 ntBASIC20.13■□□□□ 0.81
Six4Q61321 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.13■□□□□ 0.81
Six4Q61321 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Six4Q61321 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Six4Q61321 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
Six4Q61321 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Six4Q61321 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.12■□□□□ 0.81
Six4Q61321 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Six4Q61321 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Six4Q61321 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.12■□□□□ 0.81
Six4Q61321 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Six4Q61321 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.11■□□□□ 0.81
Six4Q61321 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Six4Q61321 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.11■□□□□ 0.81
Six4Q61321 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Six4Q61321 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Six4Q61321 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Six4Q61321 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Six4Q61321 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Six4Q61321 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.1■□□□□ 0.81
Six4Q61321 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms