Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.36■□□□□ 0.85
Rnf43Q5NCP0 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.36■□□□□ 0.85
Rnf43Q5NCP0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf43Q5NCP0 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf43Q5NCP0 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf43Q5NCP0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf43Q5NCP0 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf43Q5NCP0 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf43Q5NCP0 Gm12933-201ENSMUST00000120203 872 ntBASIC20.33■□□□□ 0.85
Rnf43Q5NCP0 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.33■□□□□ 0.85
Rnf43Q5NCP0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rnf43Q5NCP0 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf43Q5NCP0 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf43Q5NCP0 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf43Q5NCP0 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Rnf43Q5NCP0 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf43Q5NCP0 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rnf43Q5NCP0 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.31■□□□□ 0.84
Rnf43Q5NCP0 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.31■□□□□ 0.84
Rnf43Q5NCP0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.31■□□□□ 0.84
Rnf43Q5NCP0 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rnf43Q5NCP0 Notumos-201ENSMUST00000151998 2659 ntBASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
Rnf43Q5NCP0 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.29■□□□□ 0.84
Rnf43Q5NCP0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Gm10602-201ENSMUST00000098239 609 ntBASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf43Q5NCP0 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Mir6236-201ENSMUST00000184437 123 ntBASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf43Q5NCP0 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.27■□□□□ 0.83
Rnf43Q5NCP0 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rnf43Q5NCP0 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rnf43Q5NCP0 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rnf43Q5NCP0 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms