Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sox1P53783 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sox1P53783 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.55■□□□□ 0.88
Sox1P53783 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 Gm10819-201ENSMUST00000099988 561 ntBASIC20.55■□□□□ 0.88
Sox1P53783 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sox1P53783 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Sox1P53783 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Sox1P53783 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.54■□□□□ 0.88
Sox1P53783 Gm6576-201ENSMUST00000169678 883 ntBASIC20.54■□□□□ 0.88
Sox1P53783 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.54■□□□□ 0.88
Sox1P53783 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.54■□□□□ 0.88
Sox1P53783 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Sox1P53783 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sox1P53783 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Gm715-201ENSMUST00000117865 831 ntBASIC20.53■□□□□ 0.88
Sox1P53783 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.53■□□□□ 0.88
Sox1P53783 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sox1P53783 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Sox1P53783 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.52■□□□□ 0.88
Sox1P53783 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sox1P53783 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Sox1P53783 Gm11643-201ENSMUST00000119578 864 ntBASIC20.51■□□□□ 0.87
Sox1P53783 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Sox1P53783 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sox1P53783 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sox1P53783 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sox1P53783 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Sox1P53783 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
Sox1P53783 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sox1P53783 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sox1P53783 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.5■□□□□ 0.87
Sox1P53783 Gm6211-202ENSMUST00000167849 925 ntBASIC20.5■□□□□ 0.87
Sox1P53783 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Sox1P53783 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.5■□□□□ 0.87
Sox1P53783 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sox1P53783 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sox1P53783 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sox1P53783 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sox1P53783 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.48■□□□□ 0.87
Sox1P53783 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.48■□□□□ 0.87
Sox1P53783 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sox1P53783 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Sox1P53783 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
Sox1P53783 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Sox1P53783 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 Gm27275-201ENSMUST00000184318 272 ntBASIC20.47■□□□□ 0.87
Sox1P53783 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.47■□□□□ 0.87
Sox1P53783 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Sox1P53783 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Sox1P53783 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Sox1P53783 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms