Protein–RNA interactions for Protein: P33435

Mmp13, Collagenase 3, mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp13P33435 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Mmp13P33435 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Mmp13P33435 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Mmp13P33435 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Mmp13P33435 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Mmp13P33435 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Mmp13P33435 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.36■□□□□ 0.85
Mmp13P33435 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Mmp13P33435 Gm22238-201ENSMUST00000175222 88 ntBASIC20.36■□□□□ 0.85
Mmp13P33435 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Mmp13P33435 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Mmp13P33435 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Mmp13P33435 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Mmp13P33435 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Mmp13P33435 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Mmp13P33435 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.34■□□□□ 0.85
Mmp13P33435 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Mmp13P33435 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.34■□□□□ 0.85
Mmp13P33435 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Mmp13P33435 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Mmp13P33435 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.33■□□□□ 0.85
Mmp13P33435 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Mmp13P33435 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Mmp13P33435 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Mmp13P33435 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Mmp13P33435 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Mmp13P33435 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Mmp13P33435 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.32■□□□□ 0.84
Mmp13P33435 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Mmp13P33435 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Mmp13P33435 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.31■□□□□ 0.84
Mmp13P33435 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.31■□□□□ 0.84
Mmp13P33435 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Mmp13P33435 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.3■□□□□ 0.84
Mmp13P33435 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Mmp13P33435 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Mmp13P33435 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
Mmp13P33435 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Mmp13P33435 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Mmp13P33435 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Mmp13P33435 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Mmp13P33435 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Mmp13P33435 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Mmp13P33435 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.28■□□□□ 0.84
Mmp13P33435 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Mmp13P33435 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Mmp13P33435 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.28■□□□□ 0.84
Mmp13P33435 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Mmp13P33435 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Mmp13P33435 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Mmp13P33435 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Mmp13P33435 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Mmp13P33435 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Mmp13P33435 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Mmp13P33435 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Mmp13P33435 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.26■□□□□ 0.83
Mmp13P33435 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Mmp13P33435 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms