Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Gm5921-201ENSMUST00000075898 882 ntBASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdh1F7BJK1 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdh1F7BJK1 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdh1F7BJK1 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Pcdh1F7BJK1 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Pcdh1F7BJK1 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdh1F7BJK1 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdh1F7BJK1 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdh1F7BJK1 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Gm10399-202ENSMUST00000202768 748 ntBASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdh1F7BJK1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms