Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Pcdhgb8A0A140LI48 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.85■□□□□ 0.45
Pcdhgb8A0A140LI48 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdhgb8A0A140LI48 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdhgb8A0A140LI48 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Pcdhgb8A0A140LI48 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Pcdhgb8A0A140LI48 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Pcdhgb8A0A140LI48 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdhgb8A0A140LI48 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdhgb8A0A140LI48 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Pcdhgb8A0A140LI48 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm13241-201ENSMUST00000094493 780 ntBASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdhgb8A0A140LI48 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm10620-201ENSMUST00000098379 1332 ntBASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm12922-201ENSMUST00000120626 809 ntBASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm44949-201ENSMUST00000206423 1450 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms