Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav4-3A0A0B4J1K1 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav4-3A0A0B4J1K1 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trav4-3A0A0B4J1K1 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav4-3A0A0B4J1K1 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trav4-3A0A0B4J1K1 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
Trav4-3A0A0B4J1K1 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Trav4-3A0A0B4J1K1 AC122335.2-201ENSMUST00000213901 6181 ntBASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gm5784-201ENSMUST00000179344 2478 ntBASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC13.56□□□□□ -0.24
Trav4-3A0A0B4J1K1 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav4-3A0A0B4J1K1 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav4-3A0A0B4J1K1 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Trav4-3A0A0B4J1K1 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trav4-3A0A0B4J1K1 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms