Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm29101-201ENSMUST00000188329 1471 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm17244-201ENSMUST00000192482 3416 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Tial1-202ENSMUST00000106226 4451 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm42602-201ENSMUST00000200288 3224 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm37613-201ENSMUST00000195677 3580 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm22937-201ENSMUST00000103954 131 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm11411-201ENSMUST00000117951 719 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm15031-201ENSMUST00000121341 210 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm24346-201ENSMUST00000158712 194 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm22877-201ENSMUST00000175451 105 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm43249-201ENSMUST00000200464 458 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 AC130477.1-201ENSMUST00000226982 420 ntBASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Olfr115-201ENSMUST00000076936 939 ntAPPRIS P2 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Acsm5-205ENSMUST00000207440 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Upf3bQ3ULL6 Dnajc14-202ENSMUST00000217745 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm12950-201ENSMUST00000121683 417 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm12745-201ENSMUST00000121767 214 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm44498-201ENSMUST00000199509 111 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm43969-201ENSMUST00000204833 535 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gm38192-201ENSMUST00000194364 1847 ntBASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Inpp5b-201ENSMUST00000094782 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Upf3bQ3ULL6 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm10686-201ENSMUST00000215389 3247 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm7742-201ENSMUST00000167648 1527 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm7732-201ENSMUST00000170486 1527 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm7740-201ENSMUST00000186171 1527 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm7736-201ENSMUST00000096981 1527 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms