Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Syna-201ENSMUST00000149604 2026 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Cux1P53564 AC125351.1-201ENSMUST00000221438 2223 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Gm5310-201ENSMUST00000197861 1511 ntBASIC16.15■□□□□ 0.18
Cux1P53564 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Spaca3-201ENSMUST00000103222 831 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
Cux1P53564 Ighv14-3-201ENSMUST00000103469 399 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Ifna6-201ENSMUST00000105146 570 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Gm12047-201ENSMUST00000117561 944 ntBASIC16.15■□□□□ 0.18
Cux1P53564 Rbm48-202ENSMUST00000121877 617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Ifna11-201ENSMUST00000170428 573 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Gm17250-201ENSMUST00000180494 1010 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Fkbp6-203ENSMUST00000201784 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Gm43965-201ENSMUST00000203779 789 ntBASIC16.15■□□□□ 0.18
Cux1P53564 Gm18621-201ENSMUST00000222677 679 ntBASIC16.15■□□□□ 0.18
Cux1P53564 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Ifna1-201ENSMUST00000094972 570 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Zscan5b-203ENSMUST00000165445 1407 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
Cux1P53564 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Cux1P53564 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Cux1P53564 Ccm2-203ENSMUST00000109722 1760 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Loxl3-202ENSMUST00000101257 3252 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cux1P53564 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Plbd1-201ENSMUST00000032336 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cux1P53564 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cux1P53564 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Cux1P53564 Tbce-201ENSMUST00000039894 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cux1P53564 Gm7847-201ENSMUST00000151645 777 ntBASIC16.14■□□□□ 0.18
Cux1P53564 Gm3752-202ENSMUST00000167833 450 ntTSL 5 BASIC16.14■□□□□ 0.18
Cux1P53564 Gm10128-201ENSMUST00000171360 615 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
Cux1P53564 2410141K09Rik-204ENSMUST00000173583 515 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Cux1P53564 Gm2956-202ENSMUST00000178722 450 ntTSL 5 BASIC16.14■□□□□ 0.18
Cux1P53564 Gm10340-202ENSMUST00000188235 615 ntTSL 5 BASIC16.14■□□□□ 0.18
Cux1P53564 Gm37486-201ENSMUST00000195663 405 ntBASIC16.14■□□□□ 0.18
Cux1P53564 Lysmd4-203ENSMUST00000207757 631 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.18
Cux1P53564 Rab38-202ENSMUST00000208478 579 ntTSL 3 BASIC16.14■□□□□ 0.18
Cux1P53564 Gm5951-201ENSMUST00000220283 504 ntBASIC16.14■□□□□ 0.18
Cux1P53564 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC16.14■□□□□ 0.17
Cux1P53564 AC125374.1-201ENSMUST00000213573 1400 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Vps45-201ENSMUST00000015891 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Car13-201ENSMUST00000029071 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Gm5910-201ENSMUST00000211819 1746 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cux1P53564 C130071C03Rik-203ENSMUST00000182788 1368 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Gm32540-201ENSMUST00000207174 1872 ntTSL 5 BASIC16.14■□□□□ 0.17
Cux1P53564 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Cux1P53564 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC16.14■□□□□ 0.17
Cux1P53564 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Cux1P53564 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Trpc5-201ENSMUST00000040184 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Krtap29-1-201ENSMUST00000105051 1029 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cux1P53564 Gm13002-201ENSMUST00000119286 682 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Gm13413-201ENSMUST00000120953 602 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Gm14108-201ENSMUST00000122234 494 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Mir3100-201ENSMUST00000174918 65 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Gm16008-203ENSMUST00000181389 480 ntTSL 3 BASIC16.14■□□□□ 0.17
Cux1P53564 4930517L18Rik-201ENSMUST00000191880 482 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC16.14■□□□□ 0.17
Cux1P53564 Pf4-203ENSMUST00000202625 411 ntTSL 2 BASIC16.14■□□□□ 0.17
Cux1P53564 Gm39147-202ENSMUST00000211730 882 ntTSL 5 BASIC16.14■□□□□ 0.17
Cux1P53564 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC16.14■□□□□ 0.17
Cux1P53564 Gm28653-202ENSMUST00000227082 521 ntBASIC16.14■□□□□ 0.17
Cux1P53564 3110009E18Rik-201ENSMUST00000027637 1007 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Smim4-201ENSMUST00000049732 311 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Cux1P53564 Cks2-201ENSMUST00000075853 692 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cux1P53564 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Ttll7-203ENSMUST00000106134 2664 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 Gm43362-201ENSMUST00000198192 2470 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Ppp1r9a-206ENSMUST00000175962 3769 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gm43860-201ENSMUST00000201742 2705 ntBASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms