Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Capn15-204ENSMUST00000212149 4555 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Umad1-201ENSMUST00000159168 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Gm5244-201ENSMUST00000164001 339 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm38313-201ENSMUST00000191953 1266 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm43244-201ENSMUST00000196994 1285 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm8170-201ENSMUST00000218581 945 ntBASIC12.42□□□□□ -0.42
Traf1P39428 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 CT030652.1-201ENSMUST00000227377 1235 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Gm9791-201ENSMUST00000060997 447 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm25514-201ENSMUST00000083860 135 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm10580-201ENSMUST00000097985 396 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm10582-201ENSMUST00000097987 396 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Gm10583-201ENSMUST00000097988 396 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Traf1P39428 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.42□□□□□ -0.42
Traf1P39428 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Olfr95-201ENSMUST00000060728 5129 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Traf1P39428 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Gm16070-201ENSMUST00000127328 5210 ntTSL 2 BASIC12.42□□□□□ -0.42
Traf1P39428 CK137956-201ENSMUST00000030614 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Traf1P39428 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Traf1P39428 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gm11298-201ENSMUST00000120503 1799 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Ilf3-202ENSMUST00000115414 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 AC207128.2-201ENSMUST00000223708 1924 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Gm43636-201ENSMUST00000201501 2235 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Gm43112-201ENSMUST00000196665 3122 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC12.41□□□□□ -0.42
Traf1P39428 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC12.41□□□□□ -0.42
Traf1P39428 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gm37452-201ENSMUST00000194416 1160 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Traf1P39428 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Gm42803-201ENSMUST00000201051 451 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Gm2448-201ENSMUST00000207080 559 ntBASIC12.41□□□□□ -0.42
Traf1P39428 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Traf1P39428 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Aebp1-202ENSMUST00000109829 2541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
Traf1P39428 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Traf1P39428 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Traf1P39428 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Olfr55-202ENSMUST00000214888 4675 ntTSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Pkn3-201ENSMUST00000045246 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC12.4□□□□□ -0.42
Traf1P39428 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.4□□□□□ -0.42
Traf1P39428 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC12.4□□□□□ -0.42
Traf1P39428 Gm7541-201ENSMUST00000118361 535 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm5764-201ENSMUST00000118817 885 ntBASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms