Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Morc2a-201ENSMUST00000093389 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Ano1-202ENSMUST00000118556 4566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Mir1905-201ENSMUST00000122779 82 ntBASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Gm26976-201ENSMUST00000182929 908 ntBASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Gm28032-201ENSMUST00000184104 96 ntBASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Gm44216-201ENSMUST00000203942 157 ntBASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC11.66□□□□□ -0.54
Chmp6P0C0A3 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Slco5a1-201ENSMUST00000115402 3690 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm43334-201ENSMUST00000197740 1318 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm44913-201ENSMUST00000208060 2990 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Dnajc14-202ENSMUST00000217745 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm28693-201ENSMUST00000189622 2638 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm12389-201ENSMUST00000117696 418 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm14219-201ENSMUST00000120414 288 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm16397-201ENSMUST00000122201 494 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm17192-201ENSMUST00000169031 511 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm29155-201ENSMUST00000185910 269 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 AC154461.3-201ENSMUST00000224831 573 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 BX649293.1-201ENSMUST00000227437 631 ntBASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Cdkl2-202ENSMUST00000086978 4066 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Epb41-204ENSMUST00000105970 5059 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Greb1l-201ENSMUST00000048977 8414 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Chmp6P0C0A3 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
Chmp6P0C0A3 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Gm3372-201ENSMUST00000198806 1792 ntBASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Rad50-201ENSMUST00000020649 5153 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chmp6P0C0A3 Gm6641-201ENSMUST00000196100 1315 ntBASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms