Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC12.47□□□□□ -0.41
Traf1P39428 Uba52-ps-201ENSMUST00000183770 379 ntBASIC12.47□□□□□ -0.41
Traf1P39428 Mir6923-201ENSMUST00000184592 72 ntBASIC12.47□□□□□ -0.41
Traf1P39428 Gm6677-201ENSMUST00000195100 441 ntBASIC12.47□□□□□ -0.41
Traf1P39428 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC12.47□□□□□ -0.41
Traf1P39428 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC12.47□□□□□ -0.41
Traf1P39428 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
Traf1P39428 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Idua-203ENSMUST00000119212 3022 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Olfr1495-203ENSMUST00000216980 2063 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Traf1P39428 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Gm15519-201ENSMUST00000120088 1566 ntBASIC12.47□□□□□ -0.41
Traf1P39428 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
Traf1P39428 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Traf1P39428 AC122273.1-201ENSMUST00000213634 2327 ntBASIC12.46□□□□□ -0.41
Traf1P39428 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC12.46□□□□□ -0.41
Traf1P39428 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Traf1P39428 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Olfr434-203ENSMUST00000216562 1318 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Traf1P39428 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.46□□□□□ -0.41
Traf1P39428 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC12.46□□□□□ -0.41
Traf1P39428 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC12.46□□□□□ -0.41
Traf1P39428 Ighv5-8-202ENSMUST00000191967 337 ntBASIC12.46□□□□□ -0.41
Traf1P39428 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC12.46□□□□□ -0.41
Traf1P39428 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC12.46□□□□□ -0.41
Traf1P39428 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC12.46□□□□□ -0.41
Traf1P39428 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Traf1P39428 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC12.46□□□□□ -0.42
Traf1P39428 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Traf1P39428 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.42
Traf1P39428 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC12.46□□□□□ -0.42
Traf1P39428 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Traf1P39428 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.45□□□□□ -0.42
Traf1P39428 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC12.45□□□□□ -0.42
Traf1P39428 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Traf1P39428 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Il33-201ENSMUST00000025724 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC12.45□□□□□ -0.42
Traf1P39428 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm43167-201ENSMUST00000202001 1606 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm44369-201ENSMUST00000204543 2175 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Traf1P39428 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm13047-201ENSMUST00000117116 815 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Gm12745-201ENSMUST00000121767 214 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC12.45□□□□□ -0.42
Traf1P39428 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm27956-201ENSMUST00000175604 260 ntBASIC12.45□□□□□ -0.42
Traf1P39428 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Traf1P39428 Gm42433-201ENSMUST00000196806 940 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Gm43547-201ENSMUST00000197729 328 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Gm45085-201ENSMUST00000209100 441 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC12.45□□□□□ -0.42
Traf1P39428 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Traf1P39428 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.45□□□□□ -0.42
Traf1P39428 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms