Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm14219-201ENSMUST00000120414 288 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm6425-201ENSMUST00000136332 790 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm24809-201ENSMUST00000175318 271 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm37597-201ENSMUST00000191853 382 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm20781-201ENSMUST00000193154 693 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm21736-201ENSMUST00000195399 693 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm9487-201ENSMUST00000216600 472 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 AC140293.1-201ENSMUST00000225626 1247 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 AC102847.1-202ENSMUST00000226313 1245 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Olfr434-203ENSMUST00000216562 1318 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Morf4l2-212ENSMUST00000164609 1811 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm42833-201ENSMUST00000196019 2124 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm15264-201ENSMUST00000118050 502 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm25226-201ENSMUST00000158198 123 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm8194-201ENSMUST00000159783 859 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm9372-201ENSMUST00000168454 430 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm19587-201ENSMUST00000191395 545 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm19918-201ENSMUST00000194858 400 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm31274-201ENSMUST00000197356 229 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm45120-201ENSMUST00000208880 408 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm8181-201ENSMUST00000062242 669 ntBASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gps2-202ENSMUST00000072581 1311 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Upf3bQ3ULL6 Spata33-207ENSMUST00000212760 4074 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms