Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 AC129336.2-201ENSMUST00000218053 3086 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Fam53c-202ENSMUST00000097622 4256 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 AC090962.2-201ENSMUST00000225064 1801 ntBASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Kit-201ENSMUST00000005815 5214 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Nrp2-202ENSMUST00000063594 6342 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Gm37333-201ENSMUST00000192904 2251 ntBASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.71□□□□□ -0.54
Chmp6P0C0A3 Gm5766-201ENSMUST00000160520 1977 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm14497-201ENSMUST00000119537 580 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm28833-201ENSMUST00000189671 559 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm9116-201ENSMUST00000192400 1018 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm5805-201ENSMUST00000072779 456 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Ank3-242ENSMUST00000183261 4999 ntTSL 5 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Plekha7-206ENSMUST00000182487 3476 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Gm18210-201ENSMUST00000209001 1524 ntBASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Pcdha4-201ENSMUST00000192295 4129 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC11.7□□□□□ -0.54
Chmp6P0C0A3 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm10463-202ENSMUST00000195772 2889 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ccdc136-201ENSMUST00000096084 3826 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Svil-204ENSMUST00000127297 6243 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Prdm10-204ENSMUST00000215499 6772 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm8194-201ENSMUST00000159783 859 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm19927-201ENSMUST00000185792 781 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm18776-201ENSMUST00000188833 654 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm5302-201ENSMUST00000202130 796 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm45120-201ENSMUST00000208880 408 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm8255-201ENSMUST00000218693 305 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm18514-201ENSMUST00000218980 436 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm18042-201ENSMUST00000219887 790 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ap3s1-202ENSMUST00000224622 978 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Gm37264-201ENSMUST00000194916 2192 ntBASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC11.69□□□□□ -0.54
Chmp6P0C0A3 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms