Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm16518-201ENSMUST00000117960 508 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm20392-201ENSMUST00000173047 701 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm26119-201ENSMUST00000175601 104 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Mir7035-201ENSMUST00000184713 82 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm18466-201ENSMUST00000209147 499 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm9873-201ENSMUST00000063891 1097 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Atp11c-202ENSMUST00000101527 6044 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Pkn3-201ENSMUST00000045246 3113 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Upf3bQ3ULL6 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Zfp454-201ENSMUST00000050595 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm24248-201ENSMUST00000157321 322 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm42859-201ENSMUST00000199572 193 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 CT030653.1-201ENSMUST00000224382 1279 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 AC154528.2-201ENSMUST00000228432 3023 ntBASIC11.52□□□□□ -0.57
Upf3bQ3ULL6 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Smok4a-201ENSMUST00000074512 1455 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm45041-201ENSMUST00000207366 3108 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm21142-201ENSMUST00000179999 2604 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm8684-201ENSMUST00000195078 1564 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm11560-201ENSMUST00000117567 948 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm18014-201ENSMUST00000183369 817 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms