Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Gm37035-201ENSMUST00000194809 2148 ntBASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ushbp1Q8R370 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Gm8495-201ENSMUST00000188740 694 ntBASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ushbp1Q8R370 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
Ushbp1Q8R370 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC22.42■■□□□ 1.18
Ushbp1Q8R370 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Ushbp1Q8R370 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ushbp1Q8R370 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
Ushbp1Q8R370 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ushbp1Q8R370 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ushbp1Q8R370 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ushbp1Q8R370 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
Ushbp1Q8R370 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Ushbp1Q8R370 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Gm18284-201ENSMUST00000172604 624 ntBASIC22.39■■□□□ 1.17
Ushbp1Q8R370 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ushbp1Q8R370 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ushbp1Q8R370 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ushbp1Q8R370 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ushbp1Q8R370 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC22.36■■□□□ 1.17
Ushbp1Q8R370 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC22.36■■□□□ 1.17
Ushbp1Q8R370 Gm9870-201ENSMUST00000063874 645 ntBASIC22.36■■□□□ 1.17
Ushbp1Q8R370 AC166356.1-201ENSMUST00000228236 1426 ntBASIC22.36■■□□□ 1.17
Ushbp1Q8R370 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ushbp1Q8R370 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Ushbp1Q8R370 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC22.34■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms