Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm6139-201ENSMUST00000079261 882 ntBASIC23.77■■□□□ 1.4
Trim56Q80VI1 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.77■■□□□ 1.4
Trim56Q80VI1 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC23.76■■□□□ 1.39
Trim56Q80VI1 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim56Q80VI1 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC23.75■■□□□ 1.39
Trim56Q80VI1 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
Trim56Q80VI1 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim56Q80VI1 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim56Q80VI1 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC23.74■■□□□ 1.39
Trim56Q80VI1 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC23.73■■□□□ 1.39
Trim56Q80VI1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim56Q80VI1 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim56Q80VI1 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Trim56Q80VI1 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC23.72■■□□□ 1.39
Trim56Q80VI1 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC23.72■■□□□ 1.39
Trim56Q80VI1 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim56Q80VI1 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim56Q80VI1 Gm10209-201ENSMUST00000203397 1607 ntBASIC23.71■■□□□ 1.39
Trim56Q80VI1 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC23.71■■□□□ 1.39
Trim56Q80VI1 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Trim56Q80VI1 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Trim56Q80VI1 Spcs1-204ENSMUST00000226782 949 ntBASIC23.71■■□□□ 1.39
Trim56Q80VI1 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Trim56Q80VI1 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC23.69■■□□□ 1.38
Trim56Q80VI1 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Flvcr1-202ENSMUST00000191946 1216 ntBASIC23.69■■□□□ 1.38
Trim56Q80VI1 Gm43173-201ENSMUST00000202246 593 ntBASIC23.69■■□□□ 1.38
Trim56Q80VI1 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim56Q80VI1 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim56Q80VI1 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Wdr70-203ENSMUST00000227371 1130 ntBASIC23.67■■□□□ 1.38
Trim56Q80VI1 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Trim56Q80VI1 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Gm8493-201ENSMUST00000196881 489 ntBASIC23.66■■□□□ 1.38
Trim56Q80VI1 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim56Q80VI1 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms