Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Gm27454-201ENSMUST00000185090 204 ntBASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Smarca1Q6PGB8 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smarca1Q6PGB8 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Smarca1Q6PGB8 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Smarca1Q6PGB8 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Smarca1Q6PGB8 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Smarca1Q6PGB8 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Smarca1Q6PGB8 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Smarca1Q6PGB8 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.15
Smarca1Q6PGB8 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Smarca1Q6PGB8 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Smarca1Q6PGB8 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Smarca1Q6PGB8 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Smarca1Q6PGB8 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Smarca1Q6PGB8 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Smarca1Q6PGB8 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Smarca1Q6PGB8 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Smarca1Q6PGB8 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Gm8770-201ENSMUST00000121113 1109 ntBASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Smarca1Q6PGB8 Golph3-202ENSMUST00000226517 2359 ntBASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Gm43759-201ENSMUST00000196925 1261 ntBASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Gm45417-201ENSMUST00000209533 758 ntBASIC22.21■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms