Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.28■□□□□ 0.84
Six4Q61321 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.28■□□□□ 0.84
Six4Q61321 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Six4Q61321 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.27■□□□□ 0.84
Six4Q61321 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six4Q61321 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Six4Q61321 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Six4Q61321 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Six4Q61321 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.27■□□□□ 0.83
Six4Q61321 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Six4Q61321 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six4Q61321 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.25■□□□□ 0.83
Six4Q61321 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.25■□□□□ 0.83
Six4Q61321 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.25■□□□□ 0.83
Six4Q61321 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.25■□□□□ 0.83
Six4Q61321 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Six4Q61321 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six4Q61321 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.24■□□□□ 0.83
Six4Q61321 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.24■□□□□ 0.83
Six4Q61321 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
Six4Q61321 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Six4Q61321 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six4Q61321 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.23■□□□□ 0.83
Six4Q61321 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Six4Q61321 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.23■□□□□ 0.83
Six4Q61321 Gm43137-201ENSMUST00000198052 594 ntBASIC20.23■□□□□ 0.83
Six4Q61321 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
Six4Q61321 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six4Q61321 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Six4Q61321 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Six4Q61321 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six4Q61321 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Six4Q61321 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Six4Q61321 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Six4Q61321 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Six4Q61321 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.21■□□□□ 0.83
Six4Q61321 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.21■□□□□ 0.83
Six4Q61321 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Six4Q61321 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six4Q61321 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Six4Q61321 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Six4Q61321 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.2■□□□□ 0.82
Six4Q61321 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 Gm27454-201ENSMUST00000185090 204 ntBASIC20.2■□□□□ 0.82
Six4Q61321 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Six4Q61321 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms