Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usf1Q61069 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Usf1Q61069 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usf1Q61069 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usf1Q61069 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usf1Q61069 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Reep4-203ENSMUST00000226563 1444 ntBASIC18.32■□□□□ 0.52
Usf1Q61069 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usf1Q61069 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usf1Q61069 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
Usf1Q61069 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Usf1Q61069 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.31■□□□□ 0.52
Usf1Q61069 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Nespas-201ENSMUST00000143738 1083 ntBASIC18.31■□□□□ 0.52
Usf1Q61069 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.31■□□□□ 0.52
Usf1Q61069 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usf1Q61069 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.3■□□□□ 0.52
Usf1Q61069 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Usf1Q61069 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Usf1Q61069 Gm12441-201ENSMUST00000121806 588 ntBASIC18.3■□□□□ 0.52
Usf1Q61069 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.3■□□□□ 0.52
Usf1Q61069 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.3■□□□□ 0.52
Usf1Q61069 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.3■□□□□ 0.52
Usf1Q61069 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
Usf1Q61069 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC18.3■□□□□ 0.52
Usf1Q61069 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Usf1Q61069 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usf1Q61069 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usf1Q61069 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usf1Q61069 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Usf1Q61069 Mir6236-201ENSMUST00000184437 123 ntBASIC18.29■□□□□ 0.52
Usf1Q61069 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.29■□□□□ 0.52
Usf1Q61069 Gm7514-201ENSMUST00000209475 934 ntBASIC18.29■□□□□ 0.52
Usf1Q61069 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.29■□□□□ 0.52
Usf1Q61069 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usf1Q61069 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usf1Q61069 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.28■□□□□ 0.52
Usf1Q61069 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usf1Q61069 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usf1Q61069 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usf1Q61069 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Usf1Q61069 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usf1Q61069 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Usf1Q61069 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usf1Q61069 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usf1Q61069 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usf1Q61069 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Usf1Q61069 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usf1Q61069 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usf1Q61069 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usf1Q61069 Gm27801-201ENSMUST00000184174 223 ntBASIC18.25■□□□□ 0.51
Usf1Q61069 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.25■□□□□ 0.51
Usf1Q61069 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.25■□□□□ 0.51
Usf1Q61069 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms