Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav8d-2Q5R1B6 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.72■□□□□ 0.75
Trav8d-2Q5R1B6 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav8d-2Q5R1B6 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Trav8d-2Q5R1B6 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trav8d-2Q5R1B6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav8d-2Q5R1B6 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav8d-2Q5R1B6 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trav8d-2Q5R1B6 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Gm10653-202ENSMUST00000139570 835 ntBASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8d-2Q5R1B6 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav8d-2Q5R1B6 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav8d-2Q5R1B6 Gm20760-201ENSMUST00000179197 648 ntBASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8d-2Q5R1B6 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav8d-2Q5R1B6 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav8d-2Q5R1B6 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Trav8d-2Q5R1B6 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Trav8d-2Q5R1B6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trav8d-2Q5R1B6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Gm4968-201ENSMUST00000071458 858 ntBASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8d-2Q5R1B6 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Gm22240-201ENSMUST00000175225 82 ntBASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav8d-2Q5R1B6 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8d-2Q5R1B6 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.6■□□□□ 0.73
Trav8d-2Q5R1B6 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav8d-2Q5R1B6 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Trav8d-2Q5R1B6 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav8d-2Q5R1B6 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms