Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nkx2-1P50220 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Nkx2-1P50220 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-1P50220 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-1P50220 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-1P50220 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-1P50220 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC16.52■□□□□ 0.23
Nkx2-1P50220 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nkx2-1P50220 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nkx2-1P50220 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nkx2-1P50220 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-1P50220 Gm10420-201ENSMUST00000121713 882 ntBASIC16.51■□□□□ 0.23
Nkx2-1P50220 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC16.51■□□□□ 0.23
Nkx2-1P50220 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-1P50220 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.51■□□□□ 0.23
Nkx2-1P50220 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-1P50220 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.5■□□□□ 0.23
Nkx2-1P50220 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-1P50220 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Gm43592-201ENSMUST00000196922 1165 ntBASIC16.49■□□□□ 0.23
Nkx2-1P50220 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC16.49■□□□□ 0.23
Nkx2-1P50220 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
Nkx2-1P50220 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Nkx2-1P50220 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Nkx2-1P50220 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx2-1P50220 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx2-1P50220 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Nkx2-1P50220 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx2-1P50220 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms