Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Pcdha4O88689 Gm45417-201ENSMUST00000209533 758 ntBASIC22.44■■□□□ 1.18
Pcdha4O88689 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Pcdha4O88689 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
Pcdha4O88689 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Pcdha4O88689 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
Pcdha4O88689 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC22.43■■□□□ 1.18
Pcdha4O88689 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdha4O88689 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
Pcdha4O88689 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdha4O88689 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
Pcdha4O88689 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Pcdha4O88689 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdha4O88689 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdha4O88689 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdha4O88689 Gm37035-201ENSMUST00000194809 2148 ntBASIC22.42■■□□□ 1.18
Pcdha4O88689 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Pcdha4O88689 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Pcdha4O88689 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Pcdha4O88689 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Gm6085-201ENSMUST00000182774 1470 ntBASIC22.41■■□□□ 1.18
Pcdha4O88689 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdha4O88689 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdha4O88689 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdha4O88689 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdha4O88689 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdha4O88689 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
Pcdha4O88689 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdha4O88689 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Pcdha4O88689 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Pcdha4O88689 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Pcdha4O88689 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Pcdha4O88689 Mir7075-201ENSMUST00000184187 82 ntBASIC22.39■■□□□ 1.17
Pcdha4O88689 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Pcdha4O88689 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Pcdha4O88689 Gm10209-201ENSMUST00000203397 1607 ntBASIC22.39■■□□□ 1.17
Pcdha4O88689 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
Pcdha4O88689 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Pcdha4O88689 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdha4O88689 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC22.37■■□□□ 1.17
Pcdha4O88689 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdha4O88689 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdha4O88689 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdha4O88689 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdha4O88689 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Pcdha4O88689 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC22.36■■□□□ 1.17
Pcdha4O88689 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdha4O88689 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Pcdha4O88689 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Pcdha4O88689 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdha4O88689 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdha4O88689 Gm7160-202ENSMUST00000188519 1027 ntBASIC22.35■■□□□ 1.17
Pcdha4O88689 Spcs1-204ENSMUST00000226782 949 ntBASIC22.35■■□□□ 1.17
Pcdha4O88689 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Pcdha4O88689 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC22.35■■□□□ 1.17
Pcdha4O88689 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdha4O88689 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Pcdha4O88689 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Pcdha4O88689 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
Pcdha4O88689 Gm12251-201ENSMUST00000117893 792 ntBASIC22.34■■□□□ 1.17
Pcdha4O88689 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
Pcdha4O88689 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdha4O88689 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms