Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Cops4O88544 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cops4O88544 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cops4O88544 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cops4O88544 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
Cops4O88544 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cops4O88544 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cops4O88544 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.4■□□□□ 0.54
Cops4O88544 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.4■□□□□ 0.54
Cops4O88544 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cops4O88544 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cops4O88544 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Cops4O88544 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cops4O88544 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cops4O88544 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.39■□□□□ 0.53
Cops4O88544 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.39■□□□□ 0.53
Cops4O88544 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Cops4O88544 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cops4O88544 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Cops4O88544 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Cops4O88544 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Cops4O88544 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cops4O88544 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cops4O88544 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cops4O88544 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Cops4O88544 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cops4O88544 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cops4O88544 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.36■□□□□ 0.53
Cops4O88544 Cap2-205ENSMUST00000225824 1634 ntBASIC18.36■□□□□ 0.53
Cops4O88544 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cops4O88544 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.35■□□□□ 0.53
Cops4O88544 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Cops4O88544 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cops4O88544 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Cops4O88544 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Cops4O88544 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cops4O88544 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cops4O88544 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.34■□□□□ 0.53
Cops4O88544 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.34■□□□□ 0.53
Cops4O88544 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cops4O88544 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cops4O88544 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cops4O88544 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cops4O88544 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cops4O88544 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cops4O88544 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.33■□□□□ 0.52
Cops4O88544 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cops4O88544 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cops4O88544 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Cops4O88544 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cops4O88544 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.32■□□□□ 0.52
Cops4O88544 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.32■□□□□ 0.52
Cops4O88544 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Cops4O88544 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.32■□□□□ 0.52
Cops4O88544 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cops4O88544 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cops4O88544 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cops4O88544 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cops4O88544 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms