Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp35M0QWN7 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp35M0QWN7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.33■■□□□ 1.01
Usp35M0QWN7 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Usp35M0QWN7 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.33■■□□□ 1
Usp35M0QWN7 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Usp35M0QWN7 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp35M0QWN7 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Usp35M0QWN7 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Usp35M0QWN7 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp35M0QWN7 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.32■■□□□ 1
Usp35M0QWN7 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
Usp35M0QWN7 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.32■■□□□ 1
Usp35M0QWN7 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.31■■□□□ 1
Usp35M0QWN7 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp35M0QWN7 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp35M0QWN7 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp35M0QWN7 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Usp35M0QWN7 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.31■■□□□ 1
Usp35M0QWN7 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.31■■□□□ 1
Usp35M0QWN7 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Usp35M0QWN7 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usp35M0QWN7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp35M0QWN7 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp35M0QWN7 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp35M0QWN7 Gm8495-201ENSMUST00000188740 694 ntBASIC21.3■■□□□ 1
Usp35M0QWN7 Gm8493-201ENSMUST00000196881 489 ntBASIC21.3■■□□□ 1
Usp35M0QWN7 Gm43017-201ENSMUST00000198296 752 ntBASIC21.3■■□□□ 1
Usp35M0QWN7 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp35M0QWN7 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Usp35M0QWN7 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Usp35M0QWN7 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp35M0QWN7 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp35M0QWN7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Usp35M0QWN7 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.29■■□□□ 1
Usp35M0QWN7 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.29■■□□□ 1
Usp35M0QWN7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp35M0QWN7 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp35M0QWN7 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp35M0QWN7 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Gm18284-201ENSMUST00000172604 624 ntBASIC21.28■■□□□ 1
Usp35M0QWN7 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.28■■□□□ 1
Usp35M0QWN7 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp35M0QWN7 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp35M0QWN7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
Usp35M0QWN7 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp35M0QWN7 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Usp35M0QWN7 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.27■■□□□ 1
Usp35M0QWN7 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp35M0QWN7 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.27■■□□□ 1
Usp35M0QWN7 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp35M0QWN7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Usp35M0QWN7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Usp35M0QWN7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usp35M0QWN7 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Gm34220-201ENSMUST00000223001 2709 ntBASIC21.26■□□□□ 0.99
Usp35M0QWN7 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.26■□□□□ 0.99
Usp35M0QWN7 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usp35M0QWN7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp35M0QWN7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp35M0QWN7 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.25■□□□□ 0.99
Usp35M0QWN7 Gm43530-201ENSMUST00000195920 274 ntBASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms