Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdh1F7BJK1 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Gm16464-201ENSMUST00000117815 1095 ntBASIC18■□□□□ 0.47
Pcdh1F7BJK1 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Pcdh1F7BJK1 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdh1F7BJK1 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdh1F7BJK1 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.98■□□□□ 0.47
Pcdh1F7BJK1 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdh1F7BJK1 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Nsd1-203ENSMUST00000224156 1149 ntBASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdh1F7BJK1 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Pcdh1F7BJK1 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Gm45444-201ENSMUST00000211394 898 ntBASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdh1F7BJK1 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdh1F7BJK1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Pcdh1F7BJK1 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms