Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.42■□□□□ 0.54
Scn2aA0A0J9YTW6 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn2aA0A0J9YTW6 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Gm6139-201ENSMUST00000079261 882 ntBASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Gm43173-201ENSMUST00000202246 593 ntBASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Serp2-204ENSMUST00000228055 705 ntBASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn2aA0A0J9YTW6 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Mir7075-201ENSMUST00000184187 82 ntBASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn2aA0A0J9YTW6 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn2aA0A0J9YTW6 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.37■□□□□ 0.53
Scn2aA0A0J9YTW6 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms