Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 AC151971.4-201ENSMUST00000214717 704 ntBASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC15.43■□□□□ 0.06
Trbv3A0A0A6YYE2 Gm5784-201ENSMUST00000179344 2478 ntBASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trbv3A0A0A6YYE2 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Golph3-205ENSMUST00000228671 2842 ntBASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trbv3A0A0A6YYE2 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trbv3A0A0A6YYE2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trbv3A0A0A6YYE2 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trbv3A0A0A6YYE2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
Trbv3A0A0A6YYE2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Gm9806-201ENSMUST00000051080 552 ntBASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Gm6311-201ENSMUST00000073790 878 ntBASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trbv3A0A0A6YYE2 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms