Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trav1A0A075B5Z4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav1A0A075B5Z4 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav1A0A075B5Z4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav1A0A075B5Z4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav1A0A075B5Z4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav1A0A075B5Z4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav1A0A075B5Z4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav1A0A075B5Z4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav1A0A075B5Z4 Golph3-202ENSMUST00000226517 2359 ntBASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Etf1-202ENSMUST00000180351 108 ntBASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav1A0A075B5Z4 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav1A0A075B5Z4 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav1A0A075B5Z4 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms