Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC29.99■■■□□ 2.39
HttP42859 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
HttP42859 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
HttP42859 Peli2-204ENSMUST00000226513 1320 ntBASIC29.97■■■□□ 2.39
HttP42859 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
HttP42859 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC29.95■■■□□ 2.39
HttP42859 Gm9397-201ENSMUST00000200125 605 ntBASIC29.95■■■□□ 2.39
HttP42859 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
HttP42859 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
HttP42859 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC29.92■■■□□ 2.38
HttP42859 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
HttP42859 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
HttP42859 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
HttP42859 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
HttP42859 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
HttP42859 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
HttP42859 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC29.83■■■□□ 2.37
HttP42859 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
HttP42859 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
HttP42859 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.82■■■□□ 2.36
HttP42859 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC29.82■■■□□ 2.36
HttP42859 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
HttP42859 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
HttP42859 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
HttP42859 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC29.74■■■□□ 2.35
HttP42859 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC29.74■■■□□ 2.35
HttP42859 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
HttP42859 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
HttP42859 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
HttP42859 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
HttP42859 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
HttP42859 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC29.66■■■□□ 2.34
HttP42859 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC29.65■■■□□ 2.34
HttP42859 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
HttP42859 Gm8503-201ENSMUST00000118131 455 ntBASIC29.63■■■□□ 2.33
HttP42859 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
HttP42859 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
HttP42859 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC29.57■■■□□ 2.32
HttP42859 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
HttP42859 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
HttP42859 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC29.5■■■□□ 2.31
HttP42859 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
HttP42859 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC29.48■■■□□ 2.31
HttP42859 Zfp131-207ENSMUST00000224946 1783 ntBASIC29.45■■■□□ 2.31
HttP42859 Gm24970-201ENSMUST00000175582 82 ntBASIC29.45■■■□□ 2.3
HttP42859 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
HttP42859 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
HttP42859 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC29.4■■■□□ 2.3
HttP42859 Gm9939-201ENSMUST00000067161 1154 ntBASIC29.37■■■□□ 2.29
HttP42859 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
HttP42859 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC29.37■■■□□ 2.29
HttP42859 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
HttP42859 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
HttP42859 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
HttP42859 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
HttP42859 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
HttP42859 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
HttP42859 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
HttP42859 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
HttP42859 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
HttP42859 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
HttP42859 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
HttP42859 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
HttP42859 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
HttP42859 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC29.23■■■□□ 2.27
HttP42859 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC29.22■■■□□ 2.27
HttP42859 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
HttP42859 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
HttP42859 Gm6821-201ENSMUST00000107540 542 ntBASIC29.17■■■□□ 2.26
HttP42859 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
HttP42859 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
HttP42859 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC29.13■■■□□ 2.25
HttP42859 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
HttP42859 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
HttP42859 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
HttP42859 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC29.06■■■□□ 2.24
HttP42859 Mipep-204ENSMUST00000225043 1548 ntBASIC29.02■■■□□ 2.24
HttP42859 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC29■■■□□ 2.23
HttP42859 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC29■■■□□ 2.23
HttP42859 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC28.99■■■□□ 2.23
HttP42859 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
HttP42859 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
HttP42859 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
HttP42859 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
HttP42859 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC28.87■■■□□ 2.21
HttP42859 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
HttP42859 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
HttP42859 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
HttP42859 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
HttP42859 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
HttP42859 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
HttP42859 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HttP42859 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC28.76■■■□□ 2.19
HttP42859 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
HttP42859 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HttP42859 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC28.72■■■□□ 2.19
HttP42859 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
HttP42859 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC28.71■■■□□ 2.19
HttP42859 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC28.71■■■□□ 2.19
HttP42859 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC28.7■■■□□ 2.19
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms