Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 AC122367.1-201ENSMUST00000221978 1709 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm23272-201ENSMUST00000104053 129 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm25063-201ENSMUST00000104666 94 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm15744-201ENSMUST00000161734 213 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Olfml3-204ENSMUST00000169286 874 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 AC124457.1-201ENSMUST00000198845 120 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm45574-201ENSMUST00000210921 331 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 AC136376.2-201ENSMUST00000228819 490 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm23105-201ENSMUST00000083719 134 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Gm43375-201ENSMUST00000196705 2480 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 AC108416.1-201ENSMUST00000228755 1558 ntBASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sh3rf1Q69ZI1 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 C2cd5-204ENSMUST00000203187 3494 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Ttll9-201ENSMUST00000099197 1797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Slc39a14-210ENSMUST00000152067 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Snord17-201ENSMUST00000104526 238 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 AC132446.1-201ENSMUST00000222655 226 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gm5451-201ENSMUST00000080545 579 ntBASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Exoc3l4-210ENSMUST00000223050 3418 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sh3rf1Q69ZI1 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 AC107453.4-201ENSMUST00000227068 1817 ntBASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Gm25766-201ENSMUST00000104101 131 ntBASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC11□□□□□ -0.65
Sh3rf1Q69ZI1 n-R5s84-201ENSMUST00000122591 109 ntBASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms