Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Gm23105-201ENSMUST00000083719 134 ntBASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 2810032G03Rik-202ENSMUST00000163627 2514 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 4933439C10Rik-203ENSMUST00000132226 3184 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Orc4-201ENSMUST00000028098 4066 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Scaf4Q6PFF0 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Ctsa-202ENSMUST00000103092 3646 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 AC124561.1-202ENSMUST00000228652 1929 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm15554-201ENSMUST00000120406 913 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm11836-201ENSMUST00000121022 441 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm12749-201ENSMUST00000122138 1159 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 4921508D12Rik-201ENSMUST00000124095 1075 ntTSL 2 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Snord55-201ENSMUST00000174939 79 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gm38000-201ENSMUST00000192390 1215 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Thyn1-202ENSMUST00000213683 1107 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Mical1-201ENSMUST00000019967 3563 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Gcc1-201ENSMUST00000064377 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Scaf4Q6PFF0 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Ctcfl-201ENSMUST00000094287 3217 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Gm8320-201ENSMUST00000177584 1762 ntBASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Gm8303-201ENSMUST00000178371 1762 ntBASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Gm8331-201ENSMUST00000178433 1762 ntBASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Scaf4Q6PFF0 Slc35c1-201ENSMUST00000067631 3139 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Etnppl-203ENSMUST00000166187 1712 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Gm4819-201ENSMUST00000182170 1009 ntBASIC10.64□□□□□ -0.71
Scaf4Q6PFF0 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms