Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Zfat-204ENSMUST00000162054 4386 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 AC123619.2-202ENSMUST00000225097 1568 ntBASIC8.82□□□□□ -1
Cdx1P18111 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Cog5-201ENSMUST00000036862 2997 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Cdc23-203ENSMUST00000133181 4133 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Pik3c3-202ENSMUST00000115811 3084 ntTSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Srprb-201ENSMUST00000035157 3064 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Adgrf3-201ENSMUST00000088117 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Cdx1P18111 Clcn1-201ENSMUST00000031894 3545 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Capn3-202ENSMUST00000028749 3174 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Slc27a6-201ENSMUST00000025500 2485 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Zfp60-208ENSMUST00000167955 2115 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
Cdx1P18111 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Atad5-201ENSMUST00000017694 7272 ntAPPRIS P2 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Ints3-201ENSMUST00000029542 4337 ntAPPRIS P2 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Top1-201ENSMUST00000109468 3856 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Slc7a14-202ENSMUST00000108245 3080 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Jarid2-208ENSMUST00000173246 5997 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Fndc9-201ENSMUST00000060185 2290 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC8.81□□□□□ -1
Cdx1P18111 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC8.81□□□□□ -1
Cdx1P18111 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC8.81□□□□□ -1
Cdx1P18111 Gm43184-201ENSMUST00000197247 542 ntBASIC8.81□□□□□ -1
Cdx1P18111 Gm4482-201ENSMUST00000200876 742 ntBASIC8.81□□□□□ -1
Cdx1P18111 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Gm5369-201ENSMUST00000217499 588 ntBASIC8.81□□□□□ -1
Cdx1P18111 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Gm45342-201ENSMUST00000210903 1363 ntBASIC8.81□□□□□ -1
Cdx1P18111 Gm45797-201ENSMUST00000212759 1921 ntBASIC8.81□□□□□ -1
Cdx1P18111 Oc90-201ENSMUST00000060522 1909 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Actn1-202ENSMUST00000167327 2664 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Tbx4-202ENSMUST00000108045 2959 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Olfr126-203ENSMUST00000217487 1859 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Gpr35-203ENSMUST00000169198 4214 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC8.81□□□□□ -1
Cdx1P18111 Olfr1219-203ENSMUST00000214442 3694 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Wdr78-201ENSMUST00000036451 3671 ntTSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC8.81□□□□□ -1
Cdx1P18111 Ppm1f-201ENSMUST00000027373 4922 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Sept6-201ENSMUST00000053456 4673 ntAPPRIS ALT1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 Atg9a-201ENSMUST00000040689 3764 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Gm24891-201ENSMUST00000104391 136 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm12165-201ENSMUST00000117047 342 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm15515-201ENSMUST00000117827 822 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm14665-201ENSMUST00000122294 557 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Gm25881-201ENSMUST00000157783 103 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm23085-201ENSMUST00000157849 293 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm23119-201ENSMUST00000158610 140 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 Gm19353-201ENSMUST00000184561 445 ntBASIC8.8□□□□□ -1
Cdx1P18111 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC8.8□□□□□ -1
Cdx1P18111 Gm5051-201ENSMUST00000204085 485 ntBASIC8.8□□□□□ -1
Cdx1P18111 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Gm45770-201ENSMUST00000212105 616 ntBASIC8.8□□□□□ -1
Cdx1P18111 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 AC154276.3-201ENSMUST00000227643 998 ntBASIC8.8□□□□□ -1
Cdx1P18111 AC156501.1-201ENSMUST00000228219 270 ntBASIC8.8□□□□□ -1
Cdx1P18111 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC8.8□□□□□ -1
Cdx1P18111 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Gm43081-201ENSMUST00000199082 1380 ntBASIC8.8□□□□□ -1
Cdx1P18111 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Ncor2-201ENSMUST00000055256 7780 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
Cdx1P18111 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC8.8□□□□□ -1
Cdx1P18111 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms