Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Ank3-204ENSMUST00000092432 5832 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm6714-201ENSMUST00000218677 2330 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm13022-201ENSMUST00000121181 285 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm7504-201ENSMUST00000201449 424 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Zfp366-201ENSMUST00000056558 6382 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm4978-201ENSMUST00000071565 801 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Dffa-201ENSMUST00000030816 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Osbpl7-206ENSMUST00000168565 3535 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gm7841-201ENSMUST00000122108 1629 ntBASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Smc1aQ9CU62 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm12247-201ENSMUST00000117585 670 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm38314-201ENSMUST00000195709 625 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm5982-201ENSMUST00000196234 512 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm18561-201ENSMUST00000206027 804 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 AC114645.1-201ENSMUST00000215831 187 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Gm8752-201ENSMUST00000173427 1694 ntBASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Smc1aQ9CU62 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Gdi1-201ENSMUST00000015435 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 2010111I01Rik-201ENSMUST00000021911 2979 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Mgll-204ENSMUST00000113585 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Smc1aQ9CU62 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms