Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm25072-201ENSMUST00000175233 235 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm23153-201ENSMUST00000175323 313 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm5210-201ENSMUST00000182150 1010 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm27441-201ENSMUST00000185000 105 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm8255-201ENSMUST00000218693 305 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 AC129308.3-201ENSMUST00000225652 524 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Gm8752-201ENSMUST00000173427 1694 ntBASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC11.65□□□□□ -0.55
Upf3bQ3ULL6 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm38271-201ENSMUST00000192296 1603 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm12389-201ENSMUST00000117696 418 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm5944-201ENSMUST00000118182 1001 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm17798-201ENSMUST00000182282 1035 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm28746-201ENSMUST00000187453 380 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm7880-201ENSMUST00000203748 871 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Gm7082-201ENSMUST00000209880 969 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 BX649293.1-201ENSMUST00000227437 631 ntBASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC11.64□□□□□ -0.55
Upf3bQ3ULL6 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Mettl14-204ENSMUST00000174323 4202 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Upf3bQ3ULL6 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 142.6 ms