Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Fyn-205ENSMUST00000135242 2114 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Doxl2-203ENSMUST00000184917 2468 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm6768-201ENSMUST00000022467 1878 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm37651-201ENSMUST00000194679 1494 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm13916-201ENSMUST00000117368 628 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm15329-201ENSMUST00000121408 155 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm15549-201ENSMUST00000121595 622 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gm23045-201ENSMUST00000175041 96 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC11.41□□□□□ -0.58
Usp4P35123 AC153961.1-201ENSMUST00000217760 385 ntBASIC11.41□□□□□ -0.58
Usp4P35123 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.41□□□□□ -0.58
Usp4P35123 Prrxl1-205ENSMUST00000228878 723 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.41□□□□□ -0.58
Usp4P35123 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Nemp2-201ENSMUST00000165859 3396 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm21817-201ENSMUST00000178584 2583 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Usp4P35123 Gm9244-201ENSMUST00000056767 2129 ntBASIC11.41□□□□□ -0.58
Usp4P35123 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usp4P35123 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 N4bp2l1-205ENSMUST00000202031 1864 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Hdac9-206ENSMUST00000209990 3072 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Fibcd1-201ENSMUST00000028188 4751 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Gm15352-201ENSMUST00000118696 270 ntBASIC11.4□□□□□ -0.58
Usp4P35123 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Gm22138-201ENSMUST00000158748 128 ntBASIC11.4□□□□□ -0.58
Usp4P35123 Gm6485-201ENSMUST00000160676 439 ntBASIC11.4□□□□□ -0.58
Usp4P35123 Mir7076-201ENSMUST00000183519 74 ntBASIC11.4□□□□□ -0.58
Usp4P35123 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 AC132901.1-201ENSMUST00000224345 508 ntBASIC11.4□□□□□ -0.58
Usp4P35123 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Usp4P35123 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Gm21115-201ENSMUST00000187565 2578 ntBASIC11.4□□□□□ -0.58
Usp4P35123 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usp4P35123 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Usp4P35123 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.59
Usp4P35123 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usp4P35123 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Usp4P35123 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
Usp4P35123 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Usp4P35123 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Usp4P35123 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 119.1 ms