Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm8303-201ENSMUST00000178371 1762 ntBASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Gm8331-201ENSMUST00000178433 1762 ntBASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Smc1aQ9CU62 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Papln-201ENSMUST00000021646 4260 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Tnfrsf9-205ENSMUST00000116257 2115 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm12969-201ENSMUST00000120199 1004 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm12990-201ENSMUST00000120372 468 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm13117-201ENSMUST00000120894 691 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm11980-201ENSMUST00000121445 986 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm10169-201ENSMUST00000121822 348 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm37826-201ENSMUST00000195329 322 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm35713-201ENSMUST00000210516 199 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm45410-201ENSMUST00000211331 1093 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm9111-201ENSMUST00000219394 709 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 CT030653.1-201ENSMUST00000224382 1279 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.24□□□□□ -0.45
Smc1aQ9CU62 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Kalrn-205ENSMUST00000114953 4722 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Col6a3-201ENSMUST00000056925 10106 ntTSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC12.24□□□□□ -0.45
Smc1aQ9CU62 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Apobec3-205ENSMUST00000175752 1977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm19178-201ENSMUST00000217524 1819 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm12816-201ENSMUST00000118069 1212 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Uba52-ps-201ENSMUST00000183770 379 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm42816-201ENSMUST00000198433 325 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm3726-201ENSMUST00000203110 785 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Olfr1495-203ENSMUST00000216980 2063 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Smc1aQ9CU62 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms