Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Lig3P97386 Gm8459-201ENSMUST00000162504 760 ntBASIC12□□□□□ -0.49
Lig3P97386 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Lig3P97386 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC12□□□□□ -0.49
Lig3P97386 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Lig3P97386 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 CT009527.1-201ENSMUST00000224205 339 ntBASIC12□□□□□ -0.49
Lig3P97386 Arhgef33-210ENSMUST00000225548 456 ntBASIC12□□□□□ -0.49
Lig3P97386 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Gm8420-201ENSMUST00000097103 598 ntBASIC12□□□□□ -0.49
Lig3P97386 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC12□□□□□ -0.49
Lig3P97386 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lig3P97386 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lig3P97386 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC12□□□□□ -0.49
Lig3P97386 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12□□□□□ -0.49
Lig3P97386 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Gm43242-201ENSMUST00000199507 1776 ntBASIC12□□□□□ -0.49
Lig3P97386 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Lig3P97386 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Lig3P97386 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
Lig3P97386 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Gm9673-201ENSMUST00000119287 781 ntBASIC11.99□□□□□ -0.49
Lig3P97386 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC11.99□□□□□ -0.49
Lig3P97386 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC11.99□□□□□ -0.49
Lig3P97386 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.99□□□□□ -0.49
Lig3P97386 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Lig3P97386 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC11.99□□□□□ -0.49
Lig3P97386 Gm7940-201ENSMUST00000218195 769 ntBASIC11.99□□□□□ -0.49
Lig3P97386 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 AC142266.1-201ENSMUST00000228107 415 ntBASIC11.99□□□□□ -0.49
Lig3P97386 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC11.99□□□□□ -0.49
Lig3P97386 AC167022.1-201ENSMUST00000218647 1458 ntBASIC11.99□□□□□ -0.49
Lig3P97386 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Lig3P97386 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Lig3P97386 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Lig3P97386 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lig3P97386 Mid1-201ENSMUST00000036753 3753 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Lig3P97386 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Erich3-203ENSMUST00000189969 3460 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Lig3P97386 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Lig3P97386 AC158636.1-201ENSMUST00000220118 1393 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Lig3P97386 Gm11957-201ENSMUST00000118304 779 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Gm12663-201ENSMUST00000118481 958 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Gm12791-201ENSMUST00000120788 655 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lig3P97386 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC11.98□□□□□ -0.49
Lig3P97386 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Lig3P97386 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Lig3P97386 Gm11942-201ENSMUST00000180255 345 ntBASIC11.98□□□□□ -0.49
Lig3P97386 Gm43002-201ENSMUST00000200310 155 ntBASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms